The program at JIPMER charges a tuition fee of approximately INR 11,410 for the first year and INR 5,760 for the subsequent years. The hostel fees are INR 20,000 for the first year and INR 12,000 annually thereafter. The overall cost for the course, including tuition, hostel, and other fees, is estimated to be around INR 60,000. JIPMER offers several scholarships, including those available through the National Scholarship Portal (NSP) and e-grantz, which can provide financial aid of up to INR 1 lakh.
Additionally, a paid internship is available in the final year, with stipends ranging from INR 4,950 to INR 13,000 per month, depending on the program. As this is a central government institution, the fees are relatively low compared to other colleges. However, there are no campus placements available, although internship opportunities exist.

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